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first holoview chart

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This commit is contained in:
Sander Roosendaal
2019-02-26 22:11:28 +01:00
parent 5ba0aee1dd
commit f538dc849e
13 changed files with 250 additions and 64 deletions
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6
.ipynb_checkpoints/Untitled-checkpoint.ipynb Normal file
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@@ -0,0 +1,6 @@
{
"cells": [],
"metadata": {},
"nbformat": 4,
"nbformat_minor": 2
}

238
rowers/interactiveplots.py
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@@ -20,11 +20,6 @@ from bokeh.palettes import Dark2_8 as palette
import itertools
from bokeh.plotting import figure, ColumnDataSource, Figure,curdoc
from bokeh.models import CustomJS,Slider, TextInput,BoxAnnotation
try:
from bokeh.charts import Histogram,HeatMap,Area,BoxPlot,Bar
from bokeh.charts.attributes import CatAttr
except:
pass
from bokeh.resources import CDN,INLINE
from bokeh.embed import components
@@ -60,6 +55,7 @@ import math
import numpy as np
import pandas as pd
import holoviews as hv
from holoviews import opts
from pytz import timezone as tz,utc
from django.utils.timezone import get_current_timezone
from django.utils.timezone import activate
@@ -85,17 +81,6 @@ from rowers.utils import lbstoN
from rowers.datautils import p0
import rowers.datautils as datautils
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
def errorbar(fig, x, y, source=ColumnDataSource(),
xerr=False, yerr=False, color='black',
@@ -204,6 +189,17 @@ def interactive_boxchart(datadf,fieldname,extratitle=''):
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
@@ -320,21 +316,43 @@ def interactive_activitychart(workouts,startdate,enddate,stack='type'):
df.sort_values('date_sorting',inplace=True)
df.to_csv('~/s/data.csv')
hv.extension('bokeh')
p = hv.Bars(df,values='duration',
# label = CatAttr(columns=['date'], sort=False),
xlabel='Date',
ylabel='Time',
title='Activity {d1} to {d2}'.format(
table = hv.Table(df,[('date','Date'),('type','Workout Type')],[('duration','Duration')])
bars=table.to.bars(['date','type'],['duration'])
bars.opts(
opts.Bars(color=hv.Cycle('Category20'), show_legend=True, stacked=True,
tools=['hover'], width=600, xrotation=90))
p = hv.render(bars)
p.title.text = 'Activity {d1} to {d2}'.format(
d1 = startdate.strftime("%Y-%m-%d"),
d2 = enddate.strftime("%Y-%m-%d"),
),
stack=stack,
plot_width=350,
plot_height=250,
toolbar_location = None,
)
)
p.plot_width=350
p.plot_height=250
p.toolbar_location = None
# p = hv.Bars(df,values='duration',
# label = CatAttr(columns=['date'], sort=False),
# xlabel='Date',
# ylabel='Time',
# title='Activity {d1} to {d2}'.format(
# d1 = startdate.strftime("%Y-%m-%d"),
# d2 = enddate.strftime("%Y-%m-%d"),
# ),
# stack=stack,
# plot_width=350,
# plot_height=250,
# toolbar_location = None,
# )
# for legend in p.legend:
@@ -354,13 +372,7 @@ def interactive_activitychart(workouts,startdate,enddate,stack='type'):
#p.yaxis.axis_label = 'Minutes'
try:
p = renderer.get_plot(p).state
script, div = components(p)
except:
script = ''
div = ''
script,div = components(p)
return script,div
def interactive_forcecurve(theworkouts,workstrokesonly=False):
@@ -454,6 +466,17 @@ def interactive_forcecurve(theworkouts,workstrokesonly=False):
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -764,6 +787,17 @@ def fitnessmetric_chart(fitnessmetrics,user,workoutmode='rower'):
x_axis_type='datetime')
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
@@ -850,6 +884,17 @@ def interactive_histoall(theworkouts):
)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
@@ -1599,6 +1644,17 @@ def interactive_otwcpchart(powerdf,promember=0,rowername=""):
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -1888,6 +1944,17 @@ def interactive_cpchart(rower,thedistances,thesecs,theavpower,
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -2195,6 +2262,17 @@ def interactive_chart(id=0,promember=0,intervaldata = {}):
tools=TOOLS)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
@@ -2388,6 +2466,17 @@ def interactive_multiflex(datadf,xparam,yparam,groupby,extratitle='',
toolbar_sticky=False,plot_width=920)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
@@ -2617,6 +2706,17 @@ def interactive_cum_flex_chart2(theworkouts,promember=0,
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -2847,6 +2947,19 @@ def interactive_flex_chart2(id=0,promember=0,
plottype='line',
workstrokesonly=False):
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
#rowdata,row = dataprep.getrowdata_db(id=id)
columns = [xparam,yparam1,yparam2,
'ftime','distance','fpace',
@@ -3036,6 +3149,17 @@ def interactive_flex_chart2(id=0,promember=0,
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -3647,6 +3771,17 @@ def interactive_bar_chart(id=0,promember=0):
tools=TOOLS)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -3816,6 +3951,17 @@ def interactive_multiple_compare_chart(ids,xparam,yparam,plottype='line',
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -4068,6 +4214,17 @@ def interactive_comparison_chart(id1=0,id2=0,xparam='distance',yparam='spm',
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'
@@ -4199,6 +4356,17 @@ def interactive_otw_advanced_pace_chart(id=0,promember=0):
toolbar_sticky=False)
# add watermark
watermarkurl = "/static/img/logo7.png"
watermarksource = ColumnDataSource(dict(
url = [watermarkurl],))
watermarkrange = Range1d(start=0,end=1)
watermarkalpha = 0.6
watermarkx = 0.99
watermarky = 0.01
watermarkw = 184
watermarkh = 35
watermarkanchor = 'bottom_right'
plot.extra_y_ranges = {"watermark": watermarkrange}
plot.extra_x_ranges = {"watermark": watermarkrange}
plot.sizing_mode = 'scale_width'

18
rowers/management/commands/processemail.py
View File

@@ -57,7 +57,7 @@ def processattachment(rower, fileobj, title, uploadoptions,testing=False):
except AttributeError:
filename = fileobj[6:]
if testing:
print 'Attribute Error', filename
print('Attribute Error', filename)
# test if file exists and is not empty
@@ -66,11 +66,11 @@ def processattachment(rower, fileobj, title, uploadoptions,testing=False):
line = fop.readline()
except (IOError, UnicodeEncodeError):
if testing:
print 'IOError',filename,'media/'+filename
print('IOError',filename,'media/'+filename)
return 0
if testing:
print 'Creating workout from email'
print('Creating workout from email')
# set user
if rower.user.is_staff and 'username' in uploadoptions:
@@ -102,7 +102,7 @@ def processattachment(rower, fileobj, title, uploadoptions,testing=False):
pass
if testing:
print 'Workout id = {workoutid}'.format(workoutid=workoutid)
print('Workout id = {workoutid}'.format(workoutid=workoutid))
if workoutid[0]:
link = settings.SITE_URL+reverse(
@@ -242,17 +242,17 @@ class Command(BaseCommand):
testing=testing
)
except:
print "Bad ZIP file"
print attachment.document.name
print("Bad ZIP file")
print(attachment.document.name)
else:
# move attachment and make workout
if testing:
try:
print name
print(name)
except UnicodeEncodeError:
print "Unicode Error"
print("Unicode Error")
try:
print attachment.document
print(attachment.document)
except UnicodeEncodeError:
pass

10
rowers/polarstuff.py
View File

@@ -73,7 +73,10 @@ def get_token(code):
secret=POLAR_CLIENT_SECRET
)
headers = { 'Authorization': 'Basic %s' % base64.b64encode(auth_string) }
try:
headers = { 'Authorization': 'Basic %s' % base64.b64encode(auth_string) }
except TypeError:
headers = { 'Authorization': 'Basic %s' % base64.b64encode(bytes(auth_string,'utf-8')) }
response = requests.post("https://polarremote.com/v2/oauth2/token",
data=post_data,
@@ -116,7 +119,10 @@ def get_polar_notifications():
secret=POLAR_CLIENT_SECRET
)
headers = { 'Authorization': 'Basic %s' % base64.b64encode(auth_string) }
try:
headers = { 'Authorization': 'Basic %s' % base64.b64encode(auth_string) }
except TypeError:
headers = { 'Authorization': 'Basic %s' % base64.b64encode(bytes(auth_string,'utf-8')) }
response = requests.get(url, headers=headers)

5
rowers/tasks.py
View File

@@ -1657,7 +1657,10 @@ def handle_makeplot(f1, f2, t, hrdata, plotnr, imagename,
except IOError:
row = rdata(f2 + '.gz', rower=rr)
haspower = row.df[' Power (watts)'].mean() > 50
try:
haspower = row.df[' Power (watts)'].mean() > 50
except TypeError:
haspower = True
nr_rows = len(row.df)
if (plotnr in [1, 2, 4, 5, 8, 11, 9, 12]) and (nr_rows > 1200):

4
rowers/templates/flexchart3otw.html
View File

@@ -11,8 +11,8 @@
{{ js_res | safe }}
{{ css_res| safe }}
<script type="text/javascript" src="/static/js/bokeh-0.12.3.min.js"></script>
<script type="text/javascript" src="/static/js/bokeh-widgets-0.12.3.min.js"></script>
<script src="http://cdn.pydata.org/bokeh/release/bokeh-1.0.4.min.js"></script>
<script src="http://cdn.pydata.org/bokeh/release/bokeh-widgets-1.0.4.min.js"></script>
<script async="true" type="text/javascript">
Bokeh.set_log_level("info");
</script>

2
rowers/templates/list_workouts.html
View File

@@ -59,7 +59,7 @@
<ul class="main-content">
<li class="grid_2" style="min-height:200px;">
<script type="text/javascript" src="/static/js/bokeh-0.12.3.min.js"></script>
<script src="http://cdn.pydata.org/bokeh/release/bokeh-1.0.4.min.js"></script>
<script async="true" type="text/javascript">
Bokeh.set_log_level("info");
</script>

4
rowers/tests/test_plans.py
View File

@@ -259,7 +259,7 @@ class SessionLinkTest(TestCase):
plannedsessionstuple = []
for ps in pss:
sessiontpl = (ps.id,ps.__unicode__())
sessiontpl = (ps.id,ps.__str__())
plannedsessionstuple.append(sessiontpl)
plannedsessionstuple = tuple(plannedsessionstuple)
@@ -270,7 +270,7 @@ class SessionLinkTest(TestCase):
choices = []
for w in self.user_workouts:
wtpl = (w.id,w.__unicode__())
wtpl = (w.id,w.__str__())
choices.append(wtpl)
workoutdata['choices'] = tuple(choices)

BIN
rowers/tests/testdata/testdata.csv.gz vendored
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Binary file not shown.

2
rowers/tpstuff.py
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@@ -125,7 +125,7 @@ def uploadactivity(access_token,filename,description='',
name='Rowsandall.com workout'):
data_gz = BytesIO()
with file(filename,'rb') as inF:
with open(filename,'rb') as inF:
s = inF.read()
with gzip.GzipFile(fileobj=data_gz,mode="w") as gzf:
gzf.write(s)

6
rowers/views/analysisviews.py
View File

@@ -3442,7 +3442,7 @@ def cumstats(request,theuser=0,
fielddict.pop('workoutstate')
fielddict.pop('workoutid')
for field,verbosename in fielddict.iteritems():
for field,verbosename in fielddict.items():
thedict = {
'mean':datadf[field].mean(),
'min': datadf[field].min(),
@@ -3459,9 +3459,9 @@ def cumstats(request,theuser=0,
cor = datadf.corr(method='spearman')
cor.fillna(value=0,inplace=True)
cordict = {}
for field1,verbosename in fielddict.iteritems():
for field1,verbosename in fielddict.items():
thedict = {}
for field2,verbosename in fielddict.iteritems():
for field2,verbosename in fielddict.items():
try:
thedict[field2] = cor.loc[field1,field2]
except KeyError:

11
rowers/views/workoutviews.py
View File

@@ -4586,10 +4586,13 @@ def workout_split_view(request,id=0):
url = reverse('workouts_view')
rowname = row.name
if isinstance(rowname,unicode):
rowname = rowname.encode('utf8')
elif isinstance(rowname, str):
rowname = rowname.decode('utf8')
try:
if isinstance(rowname,unicode):
rowname = rowname.encode('utf8')
elif isinstance(rowname, str):
rowname = rowname.decode('utf8')
except:
pass
qdict = {'q':rowname}
url+='?'+urllib.urlencode(qdict)

4
templates/newbase.html
View File

@@ -29,8 +29,8 @@
<script src="/static/cookielaw/js/cookielaw.js"></script>
{% analytical_head_top %}
<link rel="stylesheet" href="/static/css/bokeh-0.12.3.min.css" type="text/css" />
<link rel="stylesheet" href="/static/css/bokeh-widgets-0.12.3.min.css" type="text/css" />
<link rel="stylesheet" href="http://cdn.pydata.org/bokeh/release/bokeh-1.0.4.min.css" type="text/css" />
<link rel="stylesheet" href="http://cdn.pydata.org/bokeh/release/bokeh-widgets-1.0.4.min.css" type="text/css" />
<link rel="stylesheet" type="text/css" href="/static/admin/css/forms.css"/>
<link rel="stylesheet" type="text/css" href="/static/admin/css/widgets.css"/>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" >